Marker Genes

Widget provides access to a public database of marker genes.

Outputs - Genes

Database sources:

  • PanglaoDB

    <cite>Oscar Franzén, Li-Ming Gan, Johan L M Björkegren, PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data, Database, Volume 2019, 2019, baz046, https://doi.org/10.1093/database/baz046</cite>

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  • CellMarker

    <cite>[CellMarker: a manually curated resource of cell markers in human and mouse.][1] Nucleic Acids Research. 2018.</cite>

Data is preprocessed in Orange readable format and it is hosted [here.][2] One can use [Databases update](databases_update.md) widget to download (or update) files locally.

[1]:https://academic.oup.com/nar/article/47/D1/D721/5115823 [2]:http://download.biolab.si/datasets/bioinformatics/marker_genes/